Peroxicats: PEROXidases as bioCATalystS
Publications
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Total publications 80. Click in every publication for more information.
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2013
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Ruiz-Dueñas FJ, Lundell T, Floudas D, Nagy LG, Barrasa JM, Hibbett DS, Martínez AT (2013). "Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes". Mycologia, 105: 1428-1444.
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Salvachúa D, Martínez AT, Tien M, López-Lucendo MF, García F, de los Ríos V, Martínez MJ, Prieto A (2013). "Differential proteomic analysis of the secretome of Irpex lacteus and other white-rot fungi during wheat straw pretreatment". Biotechnology for Biofuels, 6: 115-129.
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Salvachúa D, Prieto A, Martínez AT, Martínez MJ (2013). "Characterization of a novel dye-decolorizing peroxidase (DyP)-type enzyme from Irpex lacteus and its application in enzymatic hydrolysis of wheat straw". Appl. Environ. Microbiol., 79: 4316-4324.
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Salvachúa D, Prieto A, Mattinen ML, Tamminen T, Liitiä T, Lille M, Willför S, Martínez AT, Martínez MJ, Faulds CB (2013). "Versatile peroxidase as a valuable tool for generating new biomolecules by homogeneous and heterogeneous cross-linking". Enz. Microb. Technol., 52: 303-311.
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Strittmatter E, Liers C, Ullrich R, Wachter S, Hofrichter M, Plattner D, Piontek K (2013). "First Crystal Structure of a Fungal High-Redox Potential Dye-decolorizing Peroxidase: Substrate Interaction Sites and Long-Range Electron Transfer". J. Biol. Chem., 288: 4095-4102.
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Strittmatter E, Wachter S, Liers C, Ullrich R, Hofrichter M, Plattner D, Piontek K (2013). "Radical formation on a conserved tyrosine residue is crucial for DyP activity". Arch. Biochem. Biophys., 537: 161-167.
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Wang X, Peter S, Ullrich R, Hofrichter M, Groves JT (2013). "Driving Force for Oxygen-Atom Transfer by Heme-Thiolate Enzymes". Angew. Chem. Int. Ed., 52: 9238-9241.
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2012
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Camarero S, Pardo I, Cañas AI, Molina-Espeja P, Record E, Martínez AT, Pecyna MJ, Alcalde M (2012). "Engineering platforms for directed evolution of Laccase from Pycnoporus cinnabarinus". Appl. Environ. Microbiol., 78: 1370-1384.
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Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, .... , Martínez AT, Vicuña R, Cullen D (2012). "Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis". Proc. Natl. Acad. Sci. USA, 109: 5458-5463.
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Fernandez-Fueyo E, Ruiz-Dueñas FJ, Miki Y, Martínez MJ, Hammel KE, Martínez AT (2012). "Lignin-degrading peroxidases from the genome of the selective ligninolytic fungus Ceriporiopsis subvermispora". J. Biol. Chem., 287: 16903-16916.
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Floudas D, .... , Martínez AT, .... , Ferreira P, .... , Ruiz-Dueñas FJ, .... , Hibbett DS (2012). "The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes". Science, 336: 1715-1719.
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García-Ruiz E, González-Pérez D, Ruiz-Dueñas FJ, Martínez AT, Alcalde M (2012). "Directed evolution of a temperature, peroxide and alkaline pH tolerant versatile peroxidase". Biochem. J., 441: 487-498.
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González-Pérez D, García-Ruiz E, Alcalde M (2012). "Saccharomyces cerevisiae in directed evolution: An efficient tool to improve enzymes". Bioengineered, 3: 1-6.
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Hernández-Ortega A, Ferreira P, Martínez AT (2012). "Fungal aryl-alcohol oxidase: a peroxide-producing flavoenzyme involved in lignin degradation". Appl. Microbiol. Biotechnol., 93: 1395-1410.
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Hernández-Ortega A, Ferreira P, Merino P, Medina M, Guallar V, Martínez AT (2012). "Stereoselective Hydride Transfer by Aryl-Alcohol Oxidase, a Member of the GMC Superfamily". ChemBioChem, 13: 427-435.
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Hernández-Ortega A, Lucas F, Ferreira P, Medina M, Guallar V, Martínez AT (2012). "Role of Active Site Histidines in the Two Half-Reactions of the Aryl-Alcohol Oxidase Catalytic Cycle". Biochemistry, 51: 6595-6608.
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Kluge M, Ullrich R, Scheibner K, Hofrichter M (2012). "Stereoselective benzylic hydroxylation of alkylbenzenes and epoxidation of styrene derivatives catalyzed by the peroxygenase of Agrocybe aegerita". Green Chem., 14: 440-446.
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Morales M, Mate MJ, Romero A, Martínez MJ, Martínez AT, Ruiz-Dueñas FJ (2012). "Two oxidation sites for low redox-potential substrates: A directed mutagenesis, kinetic and crystallographic study on Pleurotus eryngii versatile peroxidase". J. Biol. Chem., 287: 41053-41067.
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Poraj-Kobielska M, Kinne M, Ullrich R, Scheibner K, Hofrichter M (2012). "A spectrophotometric assay for the detection of fungal peroxygenases". Anal. Biochem., 421: 327-329.
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Wang X, Peter S, Kinne M, Hofrichter M, Groves JT (2012). "Detection and Kinetic Characterization of a Highly Reactive Heme–Thiolate Peroxygenase Compound I". J. Am. Chem. Soc., 134: 12897-12900.
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Expected impacts of Peroxicats
The impacts from the use of the novel and robust peroxidases/peroxygenases developed in PEROXICATS will concern the European Biotechnology, Bulk and Fine Chemicals (including Pharmaceuticals) sectors. The European chemical industry already maintains a top position at the world level, but during the last years it has lost its first place in the ranking to Asia (China and Japan included) according to the 2009 Annual Report of CEFIC, the European Chemical Industry Council. In organic synthesis, specific oxidation/oxygenation reactions still represent a challenging area, both in synthesis or production of bulk chemicals as in the specialties and pharmaceutical sector. As stated in an EuropaBio/ESAB report on sustainable industrial development in the EU, White Biotechnology should be one of the pillars to maintain the leading position of the chemical industry in Europe by both identifying/engineering specific enzymes for obtaining complex molecules for speciality chemicals and by improving the efficiency (rather than the novelty) of the production process.

The new peroxidases/peroxygenases from PEROXICATS will be of interest in these two industrial sectors. The following examples give an idea of their potential use in different industrial applications:
- Oxygenation/hydroxylation of aromatic bulk hydrocarbons
- Oxyfunctionalization of various bioactive molecules (drugs, pesticides, etc)
- Plant cell-wall delignification
- Enzyme-assisted bleaching of paper pulp
- Functionalization of natural fibres
- Production of flavours for food and beverages
- Production of adhesives and (food and non-food) biomaterials
- Modification of lignin
- Removal of protecting groups in chemical synthesis by O- and N-dealkylation
- Degradation of phenolic and non-phenolic aromatic pollutants
- Degradation of high redox-potential and polymeric dyes
- Degradation of polycyclic aromatic hydrocarbons, pesticides, dioxins, chlorophenols and explosives
- Organic synthesis (selective oxidative coupling: C-C, C-N, C-S)
- Production of polymers
- Production of biologically active compounds (antibiotics, derivatization of amino acids, etc)

protein purification
Protein purification. Foto: R. Ulrich.
eu Official website of peroxicats [Peroxidases as biocatalysts]. Novel and more robust fungal peroxidases as industrial biocatalysts. This project has received funding from the European Union’s Seventh Framework Programme for research, technological development and demonstration under Grant Agreement nº: KBBE-2010-4-265397. © Peroxicats 2011. Developed by Shunet. This site is optimized for the following versions and browsers: Internet Explorer 8 or higher, Firefox 3.6 or higher, Safari 5 or higher, Google Chrome 10 or higher and Opera 10.10 or higher.